Selected Publications:
1. Feifei Zhang#, Chuanpeng Dong#, Ryan D. Chow#, Shan Xin#, Emily He, Yanzhi Feng, Lvyun Zhu, Daniyal Mirza, Xiaolong Tian, Luojia Yang, Liqun Zhou, Xinyu Ling, Qin Han, Rong Fan, Sidi Chen*, Guangchuan Wang*. Rational Design of Immune Gene Therapy Combinations via In Vivo CRISPR Activation Screen of Tumor Microenvironment Modulators. Cancer Discovery. 2026;16(6):1222–1244. doi:10.1158/2159-8290.CD-25-0545.
2. Luojia Yang, Paul A. Renauer, Kaiyuan Tang, Josh Saskin, Liqun Zhou, Charles Zou, Seok-Hoon Lee, Madison Fox, Samuel Johnson-Noya, Benedict Weiss, Stephanie Deng, Paris Fang, Binfan Chen, Giacomo Sferruzza, Saba Fooladi, Kai Zhao, Daniel Park, Feifei Zhang, Jiayi Tu, Jing Chen, Jennifer Moliterno, Murat Gunel, Lei Peng, Sidi Chen. OR7A10 GPCR engineering boosts CAR-NK therapy against solid tumours. Nature. 2026;652(8110):740–751. doi:10.1038/s41586-026-10149-8.
3. Alev Baysoy#, Xiaolong Tian#, Paul Renauer#, Feifei Zhang#, Zhiliang Bai, Hao Shi, Mingyu Yang, Dingyao Zhang, Miao Liu, Haikuo Li, Bo Tao, Archibald Enninful, Yao Lu, Fu Gao, Guangchuan Wang, Wanqiu Zhang, Thao Tran, Nathan Heath Patterson, Jie Sheng, Shuozhen Bao, Chuanpeng Dong, Shan Xin, Binfan Chen, Mei Zhong, Sherri Rankin, Cliff Guy, Yan Wang, Jon P. Connelly, Shondra M. Pruett-Miller, Daifeng Wang, Mina Xu, Mark B. Gerstein, Hongbo Chi, Sidi Chen*, Rong Fan*. Large-scale, spatially resolved panoramic CRISPR screening in native tissue environments using Perturb-DBiT. Nature Biotechnology. 2026. doi:10.1038/s41587-026-03127-y.
4. Yinghua Wang, Weiwei Hu, Rui Xia, Xianfa Yang, Yange Gu, Zihan Ning, Tiange Yang, Chune Yu, Lulu Zhang, Dun Li, Yitian Jin, Jianhua Li, Feifei Zhang, Yaochen Xu, Chenqi Xu, Zhengxin Wang, Naihe Jing, Luonan Chen, Guangchuan Wang. CLIM-TIME identifies metastatic microenvironment modulators for T cell therapy response. Cell. 2026;189(5):1555–1572.e23. doi:10.1016/j.cell.2025.12.042.
5. Chuanpeng Dong, Feifei Zhang, Kaiyuan Tang, Nipun Verma, Xinxin Zhu, Di Feng, James Cai, Hongyu Zhao, Sidi Chen*. TCPGdb: A Comprehensive T-cell Perturbation Genomics Database for the Identification of Critical T-cell Regulators. Cancer Immunology Research. 2026;14(2):219–227. doi:10.1158/2326-6066.CIR-25-0168.
6. Feifei Zhang#, Ryan D. Chow#, Emily He, Chuanpeng Dong, Shan Xin, Daniyal Mirza, Yanzhi Feng, Xiaolong Tian, Nipun Verma, Medha Majety, Yueqi Zhang, Guangchuan Wang*, Sidi Chen*. Multiplexed inhibition of immunosuppressive genes with Cas13d for combinatorial cancer immunotherapy. Nature Biotechnology. 2025;43(12):2054–2067. doi:10.1038/s41587-024-02535-2.
7. Chuanpeng Dong#, Feifei Zhang#, Emily He, Ping Ren, Nipun Verma, Xinxin Zhu, Di Feng, James Cai, Hongyu Zhao, Sidi Chen*. Sensitive detection of synthetic response to cancer immunotherapy driven by gene paralog pairs. Patterns. 2025;6(3):101184. doi:10.1016/j.patter.2025.101184.
8. Feifei Zhang#, Chen Jiang#, Dong-ping Jiang#, Yu-zhu Cui, Xin-yue Wang, Liang-zhan Sun, Miao Chen, Ka-On Lam, Sha-yi Wu, Krista Verhoeft, Dora Lai-wan Kwong*, Xin-Yuan Guan*. ARHGAP15 promotes metastatic colonization in gastric cancer by suppressing RAC1-ROS pathway. PLOS Genetics. 2023;19(2):e1010640. doi:10.1371/journal.pgen.1010640.
9. Liangzhan Sun, Shaoyan Xi, Zhengdong Zhou, Feifei Zhang, Pengchao Hu, Yuzhu Cui, Shasha Wu, Ying Wang, Shayi Wu, Yanchen Wang, Yuyang Du, Jingyi Zheng, Hui Yang, Miao Chen, Qian Yan, Dandan Yu, Chaoran Shi, Yu Zhang, Dan Xie, Xin-Yuan Guan*, Yan Li*. Elevated expression of RIT1 hyperactivates RAS/MAPK signal and sensitizes hepatocellular carcinoma to combined treatment with sorafenib and AKT inhibitor. Oncogene. 2022;41(5):732–744. doi:10.1038/s41388-021-02130-8.
10. Shayi Wu, Miao Chen, Jiao Huang, Feifei Zhang, Zhaojie Lv, Yongxu Jia, Yu-Zhu Cui, Liang-Zhan Sun, Ying Wang, Ying Tang, Krista R. Verhoeft, Yan Li, Yanru Qin, Xiang Lin, Xin-Yuan Guan*, Ka-On Lam*. ORAI2 Promotes Gastric Cancer Tumorigenicity and Metastasis through PI3K/Akt Signaling and MAPK-Dependent Focal Adhesion Disassembly. Cancer Research. 2021;81(4):986–1000. doi:10.1158/0008-5472.CAN-20-0049.
11. Guangchuan Wang, Ryan D. Chow, Lvyun Zhu, Zhigang Bai, Lupeng Ye, Feifei Zhang, Paul A. Renauer, Matthew B. Dong, Xiaoyun Dai, Xiaoya Zhang, Yaying Du, Yujing Cheng, Leilei Niu, Zhiyuan Chu, Kristin Kim, Cun Liao, Paul Clark, Youssef Errami, Sidi Chen*. CRISPR-GEMM Pooled Mutagenic Screening Identifies KMT2D as a Major Modulator of Immune Checkpoint Blockade. Cancer Discovery. 2020;10(12):1912–1933. doi:10.1158/2159-8290.CD-19-1448.
12. Shuo Fang, Ming Liu, Lei Li, Feifei Zhang, Yun Li, Qian Yan, Yu-Zhu Cui, Ying-Hui Zhu, Yun-Fei Yuan, Xin-Yuan Guan*. Lymphoid enhancer-binding factor-1 promotes stemness and poor differentiation of hepatocellular carcinoma by directly activating the NOTCH pathway. Oncogene. 2019;38(21):4061–4074. doi:10.1038/s41388-019-0704-y.
13. Yuzhu Cui#, Feifei Zhang#, Yongxu Jia, Liangzhan Sun, Miao Chen, Shayi Wu, Krista Verhoeft, Yan Li, Yanru Qin, Xinyuan Guan*, Ka-On Lam*. The BMP antagonist, SOSTDC1, restrains gastric cancer progression via inactivation of c-Jun signaling. American Journal of Cancer Research. 2019;9(11):2331–2348.
14. Feifei Zhang#, Lingling Wu#, Jie Qian#, Bo Qu, Shiwei Xia, Ting La, Yanfang Wu, Jianyang Ma, Jing Zeng, Qiang Guo, Yong Cui, Wanling Yang, Jiaqi Huang, Wei Zhu, Yihong Yao, Nan Shen*, Yuanjia Tang*. Identification of the long noncoding RNA NEAT1 as a novel inflammatory regulator acting through MAPK pathway in human lupus. Journal of Autoimmunity. 2016;75:96–104. doi:10.1016/j.jaut.2016.07.012.
15. Bo Qu#, Jianchang Cao#, Feifei Zhang#, Huijuan Cui, Jialin Teng, Jia Li, Zheng Liu, Chris Morehouse, Bahija Jallal, Yuanjia Tang, Qiang Guo, Yihong Yao, Nan Shen*. Type I Interferon Inhibition of MicroRNA-146a Maturation Through Up-Regulation of Monocyte Chemotactic Protein–Induced Protein 1 in Systemic Lupus Erythematosus. Arthritis & Rheumatology. 2015;67(12):3209–3218. doi:10.1002/art.39398.
16. Yanfang Wu, Feifei Zhang, Jianyang Ma, Xiaoyan Zhang, Lingling Wu, Bo Qu, Shiwei Xia, Shunle Chen, Yuanjia Tang*, Nan Shen*. Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus. Arthritis Research & Therapy. 2015;17(1):131. doi:10.1186/s13075-015-0632-3.