#, first author(s); *, corresponding author(s).
2026
1. Danh-Tai Hoang#*, Tian-Gen Chang#*, Cristina R. Ferrone, et al. AI-driven pathology and blood-based biomarkers: a golden opportunity to democratize precision oncology. Cancer Discovery, (in press)
2025
2. Tian-Gen Chang*, Jay Friedman, Paul E. Clavijo et al. Hypoxia-Induced EGR1 Remodels Neutrophils to Suppress Anti-Tumor Immunity. Science Immunology, 2025; 10(114): eadz2273. [Link]
3. Xiaojuan Fan#*, Tian-Gen Chang#, Chuyun Chen et al. Analysis of RNA translation with a deep learning architecture provides new insight into translation control. Nucleic Acids Research, 2025; 53(7): gkaf277. [Link]
4. Tian-Gen Chang*, Seongyong Park, Alejandro A. Schäffer et al. Hallmarks of artificial intelligence contributions to precision oncology. Nature Cancer, 2025; 6, 417–431. [Link]
5. Tian-Gen Chang#, Aris Spathis#, Alejandro A. Schäffer et al. Tumor and blood B cell abundance outperforms established immune checkpoint blockade response prediction signatures in head and neck cancer. Annals of Oncology, 2025; 36(3): 309-320. [Link]
· Highlighted in Annals of Oncology Editorial: Is the abundance of B cells the best biomarker to predict immune checkpoint inhibitor response in head and neck squamous cell cancers? 2025; 36(3): 238-239 [Link]
6. Sanna Madan#, Tian-Gen Chang#, et al. Single-cell-guided identification of logic-gated antigen combinations for designing effective and safe CAR therapy. BioRxiv, 2025. [Link]
7. Chen Weller#, Osnat Bartok#, Christopher S. McGinnis#, Heyilimu Palashati, Tian-Gen Chang, et al. Translation dysregulation in cancer as a source for targetable antigens. Cancer Cell, 2025; 43(5): 823-840. [Link]
2024
8. Yingying Cao#, Tian-Gen Chang#, Fiorella Schischlik# et al. Inferring characteristics of the tumor immune microenvironment of patients with HNSCC from single-cell transcriptomics of peripheral blood. Cancer Research Communications, 2024; 4(9): 2335-2348. [Link]
9. Tian-Gen Chang#, Yingying Cao#, Hannah J. Sfreddo# et al. LORIS robustly predicts patient outcomes with immune checkpoint blockade therapy using common clinical, pathologic and genomic features. Nature Cancer, 2024; 5: 1158–1175. [Link]
· Highlighted in Nature Cancer “News & Views”: Enhanced precision in immunotherapy, 2024; 5: 1136–1138 [Link]
· Featured in Clinical Chemistry: An AI Model (LORIS) to Predict Immune Checkpoint Blockade Response in Cancer: A Clinical Data Science Perspective, 2025; 71(3): 345–347 [Link]
· Featured by NCI Center for Biomedical Informatics & Information Technology, NCI Media Advisory, NCI Podcast "Inside Cancer Careers", and Podcast “Cancer HealthCast”
10. Yingying Cao#, Tian-Gen Chang#, Sahil Sahni et al. Reusability report: Leveraging supervised learning to uncover phenotype-relevant biology from single-cell RNA sequencing data. Nature Machine Intelligence, 2024; 6: 307–314. [Link]
11. Marica Rosaria Ippolito#, Johanna Zerbib#, Yonatan Eliezer, Eli Reuveni, Sonia Viganò, Giuseppina De Feudis, Eldad D Shulman, Anouk Savir Kadmon, Rachel Slutsky, Tian-Gen Chang, et al. Increased RNA and protein degradation is required for counteracting transcriptional burden and proteotoxic stress in human aneuploid cells. Cancer Discovery, 2024; 14(12): 2532-2553. [Link]
12. Johanna Zerbib#, Marica Rosaria Ippolito#, Yonatan Eliezer, Giuseppina De Feudis, Eli Reuveni, Anouk Savir Kadmon, Sara Martin, Sonia Viganò, Gil Leor, James Berstler, Julia Muenzner, Michael Mülleder, Emma M Campagnolo, Eldad D Shulman, Tian-Gen Chang, et al. Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage. Nature Communications, 2024; 15(1): 7772. [Link]
13. Parth Desai#, Nobuyuki Takahashi, Rajesh Kumar, Samantha Nichols, Justin Malin, Allison Hunt, Christopher Schultz, Yingying Cao, Desiree Tillo, Darryl Nousome, Lakshya Chauhan, Linda Sciuto, Kimberly Jordan, Vinodh Rajapakse, Mayank Tandon, Delphine Lissa, Yang Zhang, Suresh Kumar, Lorinc Pongor, Abhay Singh, Brett Schroder, Ajit Kumar Sharma, Tian-Gen Chang, et al. Microenvironment shapes small-cell lung cancer neuroendocrine states and presents therapeutic opportunities. Cell Reports Medicine, 2024; 5(6): 101610. [Link]
2023
14. Tian-Gen Chang*, Yingying Cao, Eldad D. Shulman, et al. Optimizing cancer immunotherapy response prediction by tumor aneuploidy score and fraction of copy number alterations. npj Precision Oncology, 2023; 7: 54. [Link]
15. Sanna Madan#, Sanju Sinha, Tian-Gen Chang, et al. Pan-cancer analysis of patient tumor single-cell transcriptomes identifies promising selective and safe chimeric antigen receptor targets in head and neck cancer. Cancers, 2023; 15(19):4885. [Link]
A full list of publications is available on Google Scholar: [Link]