Research

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  • Name:Tiangen Chang

  • Office Location:West #5 Building, 280 South Chongqing Road, Shanghai, China 200025

    Telephone:

  • Email:tiangen.chang@sjtu.edu.cn



Education & Career

· 2026–Present, Shanghai Institute of Immunology (SII), School of Basic Medical Sciences, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Principal Investigator

· 2022–2026, U.S. National Cancer Institute (NCI), Postdoctoral Fellow

· 2018–2022, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Research Scientist

· 2012–2018, University of Chinese Academy of Sciences, PhD in Computational Biology

· 2008–2012, University of Science and Technology of China, Bachelor’s in Mathematics


About the PI

Dr. Chang received his PhD from the Chinese Academy of Sciences and completed his postdoctoral training at the U.S. National Cancer Institute (NCI), National Institutes of Health (NIH). His research program lies at the intersection of clinically driven artificial intelligence (AI) and mechanistic systems biology, with a focus on decoding the complex, multi-scale interplay between the tumor microenvironment and the systemic immune system, and translating these mechanistic insights into predictable, interpretable, and programmable precision immunotherapy strategies.


Over the past five years, Dr. Chang has published 13 papers as first and/or corresponding author in leading journals including Nature Cancer, Science Immunology, Annals of Oncology, Nature Machine Intelligence, and Cancer Discovery. His work has been highlighted in multiple leading journals and mainstream media outlets.


The laboratory maintains close collaborative relationships with leading international research institutions and medical centers, including Memorial Sloan Kettering Cancer Center, Huntsman Cancer Institute, Cedars-Sinai Medical Center, the U.S. National Cancer Institute, the Weizmann Institute of Science, Tel Aviv University, Sheba Medical Center, and Attikon University Hospital (National and Kapodistrian University of Athens). Collaborative work has published in top journals such as Cell, Cancer Cell, and Cancer Discovery. Dr. Chang also serves as an invited reviewer for more than 20 international journals, including Nature Medicine, Genome Biology, and the Journal of the National Cancer Institute.


We Are Hiring! See the "Lab Members" page for more details.

Research Vision

Cancer immunotherapy has fundamentally transformed oncology, yet its benefits remain highly uneven. Many patients do not respond to current treatments, while some experience severe immune-related adverse events. These challenges arise because antitumor immune responses are not governed by single pathways, but instead emerge from complex, multi-scale interactions among tumors, immune cells, and the host microenvironment.


The AISI Lab addresses these challenges through the integration of clinically driven artificial intelligence and mechanistic systems modeling. Our goal is to advance precision immunotherapy from empirical discovery toward a more predictive, quantitative, and engineering-guided discipline.


We integrate diverse data sources — including electronic health records, routine laboratory measurements, medical imaging, flow cytometry, proteomics, single-cell sequencing, and spatial omics — to build unified computational frameworks capable of simultaneously predicting treatment response, identifying mechanisms of resistance, and informing therapeutic strategies. While our primary focus is computational immuno-oncology, the conceptual and methodological frameworks developed in the lab are also applicable to autoimmune and other immune-mediated diseases.


Research Directions

1. Predictive AI for Precision Immunotherapy

From Data Integration to Clinical Decision Support

We develop predictive models designed for real-world clinical settings that estimate treatment response probabilities and toxicity risks prior to therapy initiation. A key principle of our approach is the prioritization of routinely available clinical data — such as hematological indices, electronic health records, and standard pathology — over expensive specialized assays. This strategy aims to make precision oncology more broadly accessible across diverse healthcare systems.


2. Systems Immunology of Resistance Mechanisms

From Correlation to Causal Inference

By integrating single-cell omics, spatial transcriptomics, and multi-scale systems modeling, we investigate cellular heterogeneity, state plasticity, and spatial organization within the tumor microenvironment. Our work explores how metabolic stress (such as tumor hypoxia) and intercellular communication shape immune suppression and treatment resistance. Through this approach, we aim to identify mechanistic drivers and actionable vulnerabilities that can inform next-generation immunotherapy strategies.


3. The eOnco-Immune Digital Twin Platform

From Mechanistic Understanding to Rational Design

A long-term goal of the AISI Lab is the development of a digital twin platform that integrates patient-specific data, immunological knowledge, and multi-scale computational models. Such a framework will enable simulation of tumor–immune co-evolution in silico, supporting virtual clinical trials and rational immunotherapy design. Ultimately, this platform aims to move cancer immunotherapy toward a future where therapeutic strategies can be quantitatively modeled and optimized before clinical implementation.


#, first author(s); *, corresponding author(s).


2026

1. Danh-Tai Hoang#*, Tian-Gen Chang#*, Cristina R. Ferrone, et al. AI-driven pathology and blood-based biomarkers: a golden opportunity to democratize precision oncology. Cancer Discovery, (in press)


2025

2. Tian-Gen Chang*, Jay Friedman, Paul E. Clavijo et al. Hypoxia-Induced EGR1 Remodels Neutrophils to Suppress Anti-Tumor Immunity. Science Immunology, 2025; 10(114): eadz2273. [Link]


3. Xiaojuan Fan#*, Tian-Gen Chang#, Chuyun Chen et al. Analysis of RNA translation with a deep learning architecture provides new insight into translation control. Nucleic Acids Research, 2025; 53(7): gkaf277. [Link]


4. Tian-Gen Chang*, Seongyong Park, Alejandro A. Schäffer et al. Hallmarks of artificial intelligence contributions to precision oncology. Nature Cancer, 2025; 6, 417–431. [Link]


5. Tian-Gen Chang#, Aris Spathis#, Alejandro A. Schäffer et al. Tumor and blood B cell abundance outperforms established immune checkpoint blockade response prediction signatures in head and neck cancer. Annals of Oncology, 2025; 36(3): 309-320. [Link]

· Highlighted in Annals of Oncology Editorial: Is the abundance of B cells the best biomarker to predict immune checkpoint inhibitor response in head and neck squamous cell cancers? 2025; 36(3): 238-239 [Link]


6. Sanna Madan#, Tian-Gen Chang#, et al. Single-cell-guided identification of logic-gated antigen combinations for designing effective and safe CAR therapy. BioRxiv, 2025. [Link]


7. Chen Weller#, Osnat Bartok#, Christopher S. McGinnis#, Heyilimu Palashati, Tian-Gen Chang, et al. Translation dysregulation in cancer as a source for targetable antigens. Cancer Cell, 2025; 43(5): 823-840. [Link]


2024

8. Yingying Cao#, Tian-Gen Chang#, Fiorella Schischlik# et al. Inferring characteristics of the tumor immune microenvironment of patients with HNSCC from single-cell transcriptomics of peripheral blood. Cancer Research Communications, 2024; 4(9): 2335-2348. [Link]


9. Tian-Gen Chang#, Yingying Cao#, Hannah J. Sfreddo# et al. LORIS robustly predicts patient outcomes with immune checkpoint blockade therapy using common clinical, pathologic and genomic features. Nature Cancer, 2024; 5: 1158–1175. [Link]

· Highlighted in Nature Cancer “News & Views”: Enhanced precision in immunotherapy, 2024; 5: 1136–1138 [Link]

· Featured in Clinical Chemistry: An AI Model (LORIS) to Predict Immune Checkpoint Blockade Response in Cancer: A Clinical Data Science Perspective, 2025; 71(3): 345–347 [Link]

· Featured by NCI Center for Biomedical Informatics & Information Technology, NCI Media Advisory, NCI Podcast "Inside Cancer Careers", and Podcast “Cancer HealthCast


10. Yingying Cao#, Tian-Gen Chang#, Sahil Sahni et al. Reusability report: Leveraging supervised learning to uncover phenotype-relevant biology from single-cell RNA sequencing data. Nature Machine Intelligence, 2024; 6: 307–314. [Link]


11. Marica Rosaria Ippolito#, Johanna Zerbib#, Yonatan Eliezer, Eli Reuveni, Sonia Viganò, Giuseppina De Feudis, Eldad D Shulman, Anouk Savir Kadmon, Rachel Slutsky, Tian-Gen Chang, et al. Increased RNA and protein degradation is required for counteracting transcriptional burden and proteotoxic stress in human aneuploid cells. Cancer Discovery, 2024; 14(12): 2532-2553. [Link]


12. Johanna Zerbib#, Marica Rosaria Ippolito#, Yonatan Eliezer, Giuseppina De Feudis, Eli Reuveni, Anouk Savir Kadmon, Sara Martin, Sonia Viganò, Gil Leor, James Berstler, Julia Muenzner, Michael Mülleder, Emma M Campagnolo, Eldad D Shulman, Tian-Gen Chang, et al. Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage. Nature Communications, 2024; 15(1): 7772. [Link]


13. Parth Desai#, Nobuyuki Takahashi, Rajesh Kumar, Samantha Nichols, Justin Malin, Allison Hunt, Christopher Schultz, Yingying Cao, Desiree Tillo, Darryl Nousome, Lakshya Chauhan, Linda Sciuto, Kimberly Jordan, Vinodh Rajapakse, Mayank Tandon, Delphine Lissa, Yang Zhang, Suresh Kumar, Lorinc Pongor, Abhay Singh, Brett Schroder, Ajit Kumar Sharma, Tian-Gen Chang, et al. Microenvironment shapes small-cell lung cancer neuroendocrine states and presents therapeutic opportunities. Cell Reports Medicine, 2024; 5(6): 101610. [Link]


2023

14. Tian-Gen Chang*, Yingying Cao, Eldad D. Shulman, et al. Optimizing cancer immunotherapy response prediction by tumor aneuploidy score and fraction of copy number alterations. npj Precision Oncology, 2023; 7: 54. [Link]


15. Sanna Madan#, Sanju Sinha, Tian-Gen Chang, et al. Pan-cancer analysis of patient tumor single-cell transcriptomes identifies promising selective and safe chimeric antigen receptor targets in head and neck cancer. Cancers, 2023; 15(19):4885. [Link]


A full list of publications is available on Google Scholar: [Link]


We are hiring!

We are recruiting outstanding Research Scientists, Postdoctoral Fellows, and Research Assistants worldwide who are interested in interdisciplinary research at the interface of immunology, cancer biology, artificial intelligence, and systems biology. We welcome applicants from diverse backgrounds, including but not limited to computational biology, bioinformatics, systems biology, immunology, oncology, computer science, and mathematics.


Applicants for Research Scientist positions should hold a PhD and have postdoctoral research experience with a strong publication record. Candidates should demonstrate the ability to independently design and lead research projects and have a strong interest in clinical-question driven research.


Applicants for Postdoctoral Fellow positions should hold or soon obtain a PhD or MD/PhD with a strong publication record. We welcome candidates with expertise in areas including machine learning for biomedical data, multi-omics integration, tumor microenvironment biology, and systems modeling of immune responses.


Applicants for Research Assistant positions should hold a Bachelor’s or Master’s degree. Research assistants will participate in experimental or computational projects and are encouraged to pursue future PhD training.


Science is not a job — it is a grand adventure. The AISI Lab seeks individuals who are genuinely passionate about science, committed to a long-term pursuit of truth, and strongly motivated by the prospect of improving human health through discovery.


Lab Environment

The AISI Lab aims to build a research environment characterized by intellectual curiosity, rigorous scientific thinking, and interdisciplinary collaboration. We value researchers who are passionate about fundamental scientific questions, willing to tackle difficult but important problems, and motivated to advance human health through scientific discovery. Lab members are encouraged to develop independent ideas and pursue ambitious research directions in a supportive and collaborative environment.


Salary and Benefits

The lab offers competitive salary packages according to the policies of SJTU-SM and the SII. Additional support includes opportunities for fellowship applications, participation in international conferences, and access to advanced research infrastructure and collaborative networks.


To Apply

Please send your CV, a cover letter (describing your research interests, motivation for joining AISI Lab, and future plans), and the contact information of at least two referees to: tiangen.chang@sjtu.edu.cn. Please use the subject line: “Application – [Position] – [Your Name]”. All application materials will be kept strictly confidential. Qualified candidates will be contacted promptly for an interview (online or in person).


Location:

Shanghai Institute of Immunology

Building 5, 280 Chongqing South Road

Huangpu District, Shanghai, China


Positions will remain open until filled.


                 

Copyright 2016. Shanghai Institute of Immunology,Shanghai Jiao Tong University School of Medicine.All Rights Reserved.