Wei Wang, Jun Xu, Oliver Limbo, Jia Fei, George A. Kassavetis, Jenny Chong, James T. Kadonaga, Paul Russell, Bing Li* and Dong Wang* (2019) Molecular basis of chromatin remodeling by Rhp26, a yeast CSB ortholog Proc Natl Acad Sci USA. 116(13):6120-6129 doi: 10.1073/pnas.1818163116. (*co-correspondence)

2018年以前

Buki Kwon, Palinda Ruvan Munashingha, Yong-Keol Shin, Chul-Hwan Lee, Bing Li and Yeon-Soo Seo (2016) Physical and functional interactions between nucleosomes and Rad27, a critical component of DNA processing during DNA metabolism The FEBS Journal 283(23):4247-4262

Stephen McDaniel, Jennifer Fligor, Chun Ruan, Haochen Cui, Joseph Bridgers, Julia DiFiorea, Angela Gud, Bing Li, and Brian Strahl (2016) Combinatorial histone readout by the dual PHD domains of Rco1 mediates Rpd3S chromatin recruitment and the maintenance of transcriptional fidelity J. Biol. Chem. 291(28):14796-802

Andria Schibler, Evangelia Koutelou, Junya Tomida, Marenda Wilson-Pham, Li Wang, Yue Lu, Alexa Parra Cabrera, Renee J. Chosed, Wenqian Li, Bing Li, Xiaobing Shi, Richard D. Wood, and Sharon Y.R. Dent (2016) Histone H3K4 methylation regulates deactivation of the Spindle Assembly Checkpoint through direct binding of Mad2 Genes& Development 30(10):1187-97

Chun Ruan, Haochen Cui, Chul-Hwan Lee, Sheng Li and Bing Li  (2016) Homodimeric PHD-domain containing Rco1 constitutes a critical interaction hub within the Rpd3S histone deacetylase complex J. Biol. Chem. 291(10):5428-38. doi: 10.1074/jbc.M115.703637.

39. Joshua Mayfield, Shuang Fan, Shuo Wei, Mengmeng Zhang, Bing Li, Andrew Ellington, Felicia Etzkorn, and Yan Jessie Zhang (2015) Chemical Tools To Decipher Regulation of Phosphatases by Proline Isomerization on Eukaryotic RNA Polymerase II  ACS Chem Biol. 2015 Sep 15. [Epub ahead of print]

Yi Wang, Yanling Niu and Bing Li (2015) Balancing acts of SRI and an auto-inhibitory domain specify Set2 function at transcribed chromatin Nucleic Acids Research 43(10):4881-92. PMCID: PMC4446442

Chun Ruan, Chul-Hwan Lee, Haochen Cui, Sheng Li and Bing Li (2015) Nucleosome contact triggers conformational changes of Rpd3S driving high affinity H3K36me nucleosome engagement Cell Reports 10(2): 204-215. doi: 10.1016/j.celrep.2014.12.027.

Chun Ruan and Bing Li (2014) Reading Histone Modifications  Fundamentals of Chromatin, edited by J.L. Workman and S.M. Abmayr

Daniel S. Ginsburg, Timi Elvuchio Anlembom, Jianing Wang, Sanket R. Patel, Bing Li, and Alan G. Hinnebusch (2014) NuA4 links methylation of histone H3 lysines 4 and 36 to acetylation of histones H4 and H3 J. Biol. Chem. 289(47):32656-70 PMCID: PMC4239618

Hong Wen, Yuanyuan Li, Yuanxin Xi, Shiming Jiang, Sabrina Stratton, Danni Peng, Kaori Tanaka, Yongfeng Ren, Zheng Xia, Jun Wu, Bing Li, Michelle Barton, Wei Li, Haitao Li and Xiaobing Shi (2014) ZMYND11 links histone H3.3 K36 trimethylation to transcription elongation and tumor suppression Nature 508(7495):263-8  PMCID: PMC4142212

 Chul-Hwan Lee, Jun Wu and Bing Li (2013) Chromatin remodelers fine-tune H3K36me-directed deacetylation of neighbor nucleosomes by Rpd3S. Molecular Cell 52(2):255-63. doi: 10.1016/j.molcel.2013.08.024.

32. Miyong Yun, Chun Ruan, Jae-Wan Huh and Bing Li (2012)  Reconstitution of modified chromatin templates for in vitro functional assays. Methods Mol Biol. 833:237-53.

Jae-Wan Huh, Jun Wu, Chul-Hwan Lee, Miyong Yun, Daniel Gilada, Chad A. Brautigam and Bing Li (2012) Multivalent di-nucleosome recognition enables the Rpd3S histone deacetylase complex to tolerate decreased H3K36 methylation levels. EMBO J. 31(17):3564-74. doi: 10.1038/emboj.2012.221.

 Xiao-Fen Chen, Benjamin Kuryan, Tasuku Kitada, Nancy Tran, Jing-Yu Li, Siavash Kurdistani, Michael Grunstein, Bing Li and Michael Carey (2011) The Rpd3 Core Complex Is a Chromatin Stabilization Module  Curr Biol. 22(1):56-63

Yuwen Ke, Jae-Wan Huh, Ross Warrington, Bing Li, Nan Wu, Mei Leng, Junmei Zhang, Haydn L Ball, Bing Li and Hongtao Yu (2011) PICH and BLM limit histone association with anaphase centromeric DNA threads and promote their resolution. EMBO J 30(16):3309-21

Ling Cai, Benjamin Sutter, Bing Li and Benjamin P. Tu (2011) Acetyl-CoA Induces Cell Growth and Proliferation by Promoting the Acetylation of Histones at Growth Genes.  Molecular Cell 42, 426-437

Chhabi Govind, Hongfang Qiu, Daniel Ginsburg, Chun Ruan, Kimberly Hofmeyer, Cuihua Hu, Venkatesh Swaminathan, Jerry Workman, Bing Li and Alan G. Hinnebusch (2010) Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes Molecular Cell 39, 234-246

Mihaela Sardiu, Joshua Gilmore, Michael Carrozza, Bing Li, Jerry Workman, Laurence Florens, Michael Washburn (2009) Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics. PLoS One 4(10):e7310

Raymond Camahort, Manjunatha Shivaraju, Mark Mattingly, Bing Li, Shima Nakanishi, Dongxiao Zhu, Ali Shilatifard, Jerry L. Workman and Jennifer L. Gerton (2009) Cse4 is Part of an Octameric Nucleosome in Budding Yeast. Molecular Cell 35(6):794-805

Bing Li, Jessica Jackson, Matthew D. Simon, Brian Fleharty, Madelaine Gogol, Chris Seidel, Jerry L. Workman and Ali Shilatifard (2009) Histone H3 lysine 36 di-methylation (H3K36me2) is sufficient to recruit the Rpd3S histone deacetylase complex and to repress spurious transcription. J. Biol. Chem. 284(12):7970-6

Chia-Hui Lin, Bing Li, Selene Swanson, Ying Zhang, Laurence Florens, Michael P. Washburn, Susan M. Abmayr and Jerry L. Workman (2008) Heterochromatin Protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase. Molecular Cell 32(5):696-706

Tuba Sural, Shouyong Peng, Bing Li, Jerry L. Workman, Peter J. Park, Mitzi I. Kuroda (2008) The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila X chromosome Nature Structural & Molecular Biology (12):1318-25

Tamaki Suganuma, Jose L.Gutierrez, Bing Li, Laurence Florens, Selene K. Swanson, Michael P. Washburn, Susan M. Abmayr and Jerry L. Workman (2008) ATAC is a Double Histone Acetyltransferase Complex that Stimulates Nucleosome Sliding Nature Structural & Molecular Biology 15(4):364-72

Erica Larschan, Artyom A. Alekseyenko, Andrey A. Gortchakov, Shouyong Peng, Bing Li, Pok Yang, Jerry L. Workman, Peter J. Park, and Mitzi I. Kuroda (2007) MSL Complex Is Attracted to Genes Marked by H3K36 Trimethylation Using a Sequence-Independent Mechanism Molecular Cell 28(1): 121-133

Bing Li, Michael Carey and Jerry Workman (2007) The role of chromatin during transcription  Cell 128(4):707-19. doi: 10.1016/j.cell.2007.01.015.

Raymond Camahort, Bing Li, Laurence Florens, Selene Swanson, Michael Washburn, and Jennifer Gerton (2007) Scm3 is essential to recruit the histone H3 variant Cse4 to centromeres and to maintain a functional kinetochore Molecular Cell 26(6):853-65

Bing Li, Madelaine Gogol, Mike Carey, Samantha Pattenden, Chris Seidel and Jerry Workman (2007) Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription Genes& Development 21(11):1422-30

Bing Li, Madelaine Gogol, Mike Carey, Daeyoup Lee, Chris Seidel and Jerry Workman (2007) Combined action of PHD and Chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science 316, 1050-1054. doi: 10.1126/science.1139004.

Michael Carey, Bing Li, Jerry L. Workman (2006) RSC Exploits Histone Acetylation to Abrogate the Nucleosomal Block to RNA Polymerase II Elongation  Molecular Cell 24, 481-487

Wei-Jong Shia, Bing Li, and Jerry L. Workman (2006) SAS-mediated acetylation of histone H4 Lys 16 is required for H2A.Z incorporation at subtelomeric regions in Saccharomyces cerevisiae Genes &Development 20: 2507-2512

Jingji Jin, Yong Cai, Bing Li, Ronald C. Conaway, Jerry L. Workman,  Joan W.Conaway and Thomas Kusch  (2005)    In and out: histone variant exchange in chromatin. Trends in Biochem Sci. 30(12): 680-687

Bing Li, Chun Ruan and Jerry Workman (2005)   Histones: should I stay or should I go? Genome Biology  6:306

 Bing Li, Samantha Pattenden, Daeyoup Lee, José Gutiérrez, Jie Chen, Chris Seidel, Jennifer Gerton and Jerry Workman (2005) Preferential occupancy of histone variant H2AZ at inactive promoters influence local histone modifications and chromatin remodeling Proc. Natl. Acad. Sci. USA 102(51): 18385-18390. doi: 10.1073/pnas.0507975102.

 Michael. Carrozza, Bing Li, Laurence Florens, Tamaki Suganuma, Selene Swanson, Kenneth Lee,Wei-Jong Shia, Scott Anderson, John Yates, Michael Washburn and Jerry Workman (2005)   Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription  Cell 123(4):581-92. doi: 10.1016/j.cell.2005.10.023.

Daeyoup Lee, Elena Ezhkova, Bing Li, Samantha Pattenden, William Tansey, Jerry Workman (2005) The Proteasome Regulatory Particle Alters the SAGA Coactivator to Enhance Its Interactions with Transcriptional Activators. Cell  123(3):423-36.

Yong Cai, Jing Jin, Laurence Florens, Selene Swanson, Thomas Kusch, Bing Li, Jerry Workman, Michael Washburn, Ronald Conaway, and Joan Conaway (2005) The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes.  J Biol. Chem 280(14):13665-70

Philippe Prochasson, Kristen E. Neely, Ahmed H. Hassan, Bing Li and Jerry L. Workman (2003)  Targeting activity is required for SWI/SNF function in vivo and is accomplished through two partially redundant activator interaction domains   Molecular Cell  12(4):983-990

Bing Li, LeAnn Howe, Scott Anderson, John Yates III and Jerry Workman (2003) The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II    J Biol. Chem. 278(11):8897-8903

Vishva M. Sharma, Bing Li, and Joseph Reese (2003)   SWI/SNF dependent chromatin remodeling of RNR3 requires TAFIIs and the general transcription machinery   Genes Dev. 17: 502-515

Bing Li and Joseph Reese (2001)  Ssn6-Tup1 Regulates RNR3 by Positioning Nucleosomes and Affecting the Chromatin Structure at the Upstream Repression Sequence. J. Biol. Chem. 276(36): 33788-97.

Bing Li and Joseph Reese (2000)  Derepression of DNA Damage-Regulated Genes Requires Yeast TBP-Associated Factors   EMBO J. 19(15):4091-100. doi: 10.1093/emboj/19.15.4091.

Bing Li, Cheng Gu and Jindong Zhao (1998)  Molecular cloning and expression of pfu DNA polymerase, and its application  in long-distance PCR      Chinese Science Bulletin 43(10):863-867