流行病学与生物统计学系

张成东/ 职称:助理研究员

学历学位:博士 研究生

Email:


张成东,复旦大学生物信息学博士;长期致力于生物医学领域的新型计算方法、工具以及数据库的研究或开发,重视计算方法与特定实验方法的结合。研究的主要领域包括:1.基于机器学习/深度学习技术的基因编辑系统的优化设计;2.组学数据挖掘和知识发现研究。近五年共发表第一作者(包括共同一作)SCI文章9篇,获得专利1项,软件著作权1项。受邀担任Frontiers in Genetics杂志的主题编辑。



发表论文:

1. Chengdong Zhang#, Xuanxuan Jin#, Xianyang Chen#, Li Qiu, Qibin Leng*, Tianyi Qiu*. Antigenic evolution on a global scale reveals the potential natural selection of severe acute respiratory syndrome-coronavirus 2 by pre-existing cross-reactive T-cell immunity. Front. Microbiol.10.3389/fmicb.2021.599562

2. Ziying Hu#, Chengdong Zhang#, Shuai Wang et.al Discovery and engineering of small SlugCas9 with broad targeting range and high specificity and activity. Nucleic Acids Res. 2021 Apr 19;49(7):4008-4019. doi: 10.1093/nar/gkab148.

3. Li Qiu#, Chengdong Zhang#, Junbo Wu et.al Strong immunity against COVID-19 in the early two years of age links to frequent immunization of routine vaccines.Sci Bull (Beijing). 2020 Dec 30; 65(24): 2057–2060.

4. Daqi Wang#, Chengdong Zhang#, Bei Wang, Bin Li, Qiang Wang, Dong Liu, Hongyan Wang, Yan Zhou, Leming Shi, Feng Lan, Yongming Wang. Optimized CRISPR guide RNA design for two high-fidelity Cas9 variants by deep learning. Nature Communications volume 10, Article number: 4284 (2019)

5. Yuan Liu#, Chengdong Zhang#, Lei Li#, et.al Genome-wide Association Study of Tacrolimus Pharmacokinetics Identifies Novel Single Nucleotide Polymorphisms in the Convalescence and Stabilization Periods of Post-Transplant Liver Function, Front. Genet. doi: 10.3389/fgene.2019.00528

6. Cheng-Dong Zhang#, Yuan Yang#, et al.; RTPDB: a database providing associations between genetic variation or expression and cancer prognosis with radiotherapy-based treatment, Database, Volume 2018, Issue 1, 1 January 2018, bay118

7. Song Q#, Zhang CD#, Wu XH. Therapeutic cancer vaccines: From initial findings to prospects. Immunol Lett. 2018 Jan 30;196:11-21.

8. Liang L#, Man L#, Zhang C#, et al. Prognostic value and clinicopathologic significance of nm23 in various cancers: A systematic review and meta-analysis[J]. International Journal of Surgery, 2018.

9. Liu K#, Zhang Y#, Zhang C#, Zhang Q, et al. Methylation of S100A8 is a promising diagnosis and prognostic marker in hepatocellular carcinoma. Oncotarget. Impact Journals; 2016 Aug 30;7(35):56798–810.

10. Zhang C#, Deng X#, Zhang X#, Pan Z#, et al. Association between Serum TNF-alpha Levels and Recurrent Spontaneous Miscarriage: A Meta-analysis. Am J Reprod Immunol. 2016 Feb;75(2):8693.

11. Yang X#, Li H#, Zhang C#, Lin Z, Zhang X, Zhang Y, et al. Serum quantitative proteomic analysis reveals potential zinc-associated biomarkers for nonbacterial prostatitis. Prostate. 2015 Oct;75(14):153855.

12. Yang X-L#, Zhang C-D, Wu H-Y, Wu Y-H, Zhang Y-N, Qin M-B, et al. Effect of trichostatin A on CNE2 nasopharyngeal carcinoma cells--genome-wide DNA methylation alteration. Asian Pac J Cancer Prev. 2014;15(11):466370.

13. Zhang C-D#, Li H-T#, Liu K#, Lin Z-D, Peng Q-L, Qin X, et al. Impact of caspase-8 (CASP8) -652 6N del and D302H polymorphisms on prostate cancer in different ethnic groups. Asian Pac J Cancer Prev. 2014;15(18):77138.

14. 专利:人 NUDT2 PCDH8基因甲基化位点的检测和应用,发明人:杨小丽,张悦宁,刘坤,李佳桐,张成东,林志弟,肖非凡;证书号第 3381307 号; 专利号:ZL 2015 1 0546489.7

15. 软件著作权:科技文献信息分析处理软件V1.0;申请人:杨小丽,张成东,毛旭辉(登记号:2015SR054123